Biomedical Science Letters

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Table. 3.

Results of the Regulome DB of SNP on the STON1

Gene SNP BP A1 A2 Regulome DB
Score eQTL TFBS DNase Proteins bound Motifs
STON1 rs6729860 48644231 C A 1f + + + MNT -
rs3749142 48662098 A G 1f + + + - -
rs2293274 48640638 T C 1f + + + AFF1 -
rs2293272 48641237 G A 1f + + + RBBP5, CEBPA, CTCF ZNF423
rs6741341 48646819 T A 1f + + + - -
rs2349098 48647787 C T 1b + + + CTCF, EP300, TFAP2B GFI1B, RUNX1
rs13025488 48649304 G A 1f + + + POLR2A, EP300, FOS, STAT3, CEBPA MYB
rs6732365 48649911 C A 1f + + + CTCF -
rs12990079 48651427 C T 1f + + + - -
rs1996970 48651987 C G 1f + + + TCF12, GATA3 -
rs11681276 48652209 T G 1f + + + ZBTB17, IKZF1 -
rs11681426 48652500 A G 1f + + + MEF2A, ZNF394, KLF16, ZBTB17, TFAP4, NFIC, CEBPA, IKZF1 -
rs13027618 48653479 G C 1f + + + CTCF, TEAD4, MAX, HDAC2, SIN3A, ZNF217, ZNF687, POLR2A, YY1, GATA3 -
rs11693429 48655980 G T 1f + + + - -
rs17039250 48661300 C A 1f + + + - RORB, RORC
rs3828340 48661480 C T 1f + + + CEBPA -
rs940389 48661656 C G 1f + + + CEBPA -
rs3749144 48662386 A T 1d + + + NR2F2 RARB, RARG, RXRB
rs3749145 48662402 T C 1f + + + NR2F2 -
rs3792234 48663097 T G 1f + + + - -
rs3792235 48663260 C T 1f + + + - -
rs13011288 48663571 T C 1f + + + - -
rs12992755 48663621 C T 1f + + + - TFAP4
rs11680574 48664120 G A 1f + + + - -
rs10495953 48665358 T C 1f + + + GATA3, SIN3A, TCF12, E2F1, DPF2, ZBTB7B, SMARCE1, ESR1, ZNF217, CTBP1 -
rs4566410 48665387 C T 1f + + + GATA3, SIN3A, TCF12, E2F1, DPF2, ZBTB7B, SMARCE1, ESR1, ZNF217, CTBP1 -
rs11693559 48665452 A C 1f + + + GATA3, SIN3A, TCF12, E2F1, DPF2, ZBTB7B, ESR1, ZNF217, CTBP1 -
rs11693691 48665568 C G 1b + + + SIN3A, TCF12, E2F1, ZBTB7B, ESR1, ZNF217, CTBP1 SMAD2
rs11678306 48665635 G T 1f + + + SIN3A, E2F1, ZBTB7B -
rs3792237 48666332 A G 1f + + + SP1, CHD7, STAT6, ERG, GTF2I, ZNF462, MAX, FOXK1, ZNF138, ZNF532 -

SNP, single nucleotide polymorphism; BP, base pair; A1, minor allele; A2, major allele; eQTL, expression quantitation trait loci; TFBS, transcription factor binding site.

Biomed Sci Letters 2024;30:298-305 https://doi.org/10.15616/BSL.2024.30.4.298
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