The associated SNPs in the
Gene | Chromosome | No. | SNP | BP | Function | A1 | A2 | MAF | OR (95% CI) | Additive |
|
---|---|---|---|---|---|---|---|---|---|---|---|
Case (n = 393) |
Control (n = 8,936) |
||||||||||
2 | G1 | rs6729860 | 48644231 | Upstream | C | A | 0.31 | 0.40 | 0.67 (0.54–0.85) | 7 × 10-4 | |
G2 | SNP_A-2161077 | 48648613 | - | G | A | 0.36 | 0.45 | 0.72 (0.58–0.89) | 3 × 10-3 | ||
G3 | rs3749142 | 48662098 | Coding | A | G | 0.36 | 0.44 | 0.72 (0.58–0.90) | 4 × 10-3 | ||
G4 | SNP_A-1905545 | 48663377 | - | G | A | 0.36 | 0.44 | 0.72 (0.58–0.90) | 4 × 10-3 | ||
I1 | rs2293274 | 48640638 | Intronic | T | C | 0.31 | 0.40 | 0.67 (0.54–0.84) | 6 × 10-4 | ||
I2 | rs2293272 | 48641237 | Intronic | G | A | 0.31 | 0.40 | 0.67 (0.54–0.84) | 6 × 10-4 | ||
I3 | rs6712592 | 48646617 | Upstream | T | C | 0.31 | 0.40 | 0.67 (0.53–0.84) | 6 × 10-4 | ||
I4 | rs6741341 | 48646819 | Upstream | T | A | 0.31 | 0.40 | 0.67 (0.53–0.84) | 6 × 10-4 | ||
I5 | rs2349098 | 48647787 | Intronic | C | T | 0.31 | 0.40 | 0.67 (0.53–0.84) | 6 × 10-4 | ||
I6 | rs13025488 | 48649304 | Upstream | G | T | 0.37 | 0.45 | 0.73 (0.58–0.90) | 4 × 10-3 | ||
I7 | rs6732365 | 48649911 | Upstream | C | A | 0.37 | 0.45 | 0.72 (0.58–0.90) | 3 × 10-3 | ||
I8 | rs12990079 | 48651427 | Intronic | C | T | 0.37 | 0.44 | 0.72 (0.58–0.90) | 4 × 10-3 | ||
I9 | rs1996970 | 48651987 | Intronic | C | G | 0.37 | 0.44 | 0.73 (0.58–0.90) | 4 × 10-3 | ||
I10 | rs11681276 | 48652209 | Upstream | T | G | 0.37 | 0.44 | 0.73 (0.58–0.90) | 4 × 10-3 | ||
I11 | rs11681426 | 48652500 | Upstream | A | G | 0.37 | 0.44 | 0.73 (0.58–0.90) | 4 × 10-3 | ||
I12 | rs6716291 | 48653182 | Upstream | G | C | 0.37 | 0.44 | 0.73 (0.58–0.90) | 4 × 10-3 | ||
I13 | rs13027618 | 48653479 | Intronic | G | C | 0.37 | 0.45 | 0.73 (0.58–0.90) | 4 × 10-3 | ||
I14 | rs13034951 | 48654390 | Intronic | A | G | 0.37 | 0.44 | 0.73 (0.58–0.90) | 4 × 10-3 | ||
I15 | rs11693429 | 48655980 | Upstream | G | T | 0.37 | 0.45 | 0.72 (0.58–0.90) | 4 × 10-3 | ||
I16 | rs17039250 | 48661300 | Coding | C | A | 0.31 | 0.40 | 0.67 (0.54–0.85) | 7 × 10-4 | ||
I17 | rs3828340 | 48661480 | Coding | C | T | 0.37 | 0.44 | 0.73 (0.58–0.90) | 4 × 10-3 | ||
I18 | rs940389 | 48661656 | Missense | C | G | 0.37 | 0.44 | 0.73 (0.58–0.90) | 4 × 10-3 | ||
I19 | rs3749144 | 48662386 | Coding | A | T | 0.36 | 0.44 | 0.72 (0.58–0.90) | 3 × 10-3 | ||
I20 | rs3749145 | 48662402 | Missense | T | C | 0.36 | 0.44 | 0.72 (0.58–0.90) | 3 × 10-3 | ||
I21 | rs3792234 | 48663097 | Coding | T | G | 0.31 | 0.40 | 0.67 (0.53–0.84) | 6 × 10-4 | ||
I22 | rs3792235 | 48663260 | Intronic | C | T | 0.36 | 0.44 | 0.72 (0.58–0.90) | 3 × 10-3 | ||
I23 | rs13011288 | 48663571 | Intronic | T | C | 0.36 | 0.44 | 0.72 (0.58–0.90) | 3 × 10-3 | ||
I24 | rs12992755 | 48663621 | Intronic | C | T | 0.36 | 0.44 | 0.72 (0.58–0.90) | 3 × 10-3 | ||
I25 | rs11680574 | 48664120 | Intronic | G | A | 0.36 | 0.44 | 0.72 (0.58–0.90) | 3 × 10-3 | ||
I26 | rs6710565 | 48664188 | Intronic | G | A | 0.37 | 0.45 | 0.72 (0.58–0.90) | 4 × 10-3 | ||
I27 | rs10495953 | 48665358 | Intronic | T | C | 0.38 | 0.45 | 0.75 (0.60–0.93) | 1 × 10-2 | ||
I28 | rs4566410 | 48665387 | Intronic | C | T | 0.38 | 0.45 | 0.75 (0.60–0.93) | 1 × 10-2 | ||
I29 | rs11693559 | 48665452 | Intronic | A | C | 0.38 | 0.45 | 0.75 (0.60–0.93) | 1 × 10-2 | ||
I30 | rs11693691 | 48665568 | Intronic | C | G | 0.38 | 0.45 | 0.75 (0.60–0.93) | 1 × 10-2 | ||
I31 | rs11678306 | 48665635 | Intronic | G | T | 0.38 | 0.45 | 0.75 (0.60–0.93) | 1 × 10-2 | ||
I32 | rs13007571 | 48665892 | Intronic | C | T | 0.38 | 0.45 | 0.75 (0.60–0.93) | 1 × 10-2 | ||
I33 | rs3792237 | 48666332 | Intronic | A | G | 0.38 | 0.45 | 0.75 (0.60–0.93) | 1 × 10-2 |
The
SNP, single nucleotide polymorphism; BP, base pair; A1, minor allele; A2, major allele; MAF, minor allele frequency; OR, odds ratio; CI, confidence interval.