The World Health Organization (WHO) cites an increase in antibiotic-resistant bacteria as one of the biggest threats to global health (Tompkins and van Duin, 2021). The increase in infection rates by multidrug-resistant (MDR) gram-negative organisms poses an important and increasingly urgent challenge for patient care (Goodman et al., 2016). Gram-negative bacteria, Enterobacterales, naturally exist in the intestinal tracts of humans and animals and spread relatively easily among humans
Enterobacterales mainly include
Thus, antibiotic resistance among Enterobacterales is clinically important (Suay-Garcia and Perez-Gracia, 2019). Among antibiotic-resistant bacteria, carbapenem-resistant Enterobacterales (CRE) was listed as one of the top three classes of antibiotic-resistant bacteria by the WHO in 2017, and CRE has been referred to as superbug bacteria (Muscarella, 2014; Ma et al., 2023). CRE infections not only have a higher mortality rate and health costs than carbapenem-susceptible bacterial infections, they also have 60% resistance rates in China, and in certain regions, such as North America, Europe, and South Asia, they are now endemic (Bonomo et al., 2018; Ma et al., 2023). Epidemiological studies show that the most common CRE species are
Carbapenem is a β-lactam antibiotic that inhibits bacterial cell wall synthesis and is the last-resort drug that can treat MDR bacterial infections (Papp-Wallace et al., 2011). The main drugs of carbapenem antibiotics are meropenem, doripenem, ertapenem, and imipenem, and if they are resistant to at least one of these drugs, they are defined as CRE (Nicolau, 2008; Tompkins and van Duin, 2021). The Clinical and Laboratory Standards Institute (CLSI) has determined that the standards of resistance are a minimum inhibitory concentration (MIC) of ≥ 2 μg/mL against ertapenem and ≥ 4 μg/mL against meropenem, doripenem, and imipenem.
CRE resistance mechanisms are divided into carbapenemase-producing CRE (CP-CRE), which β-lactam ring hydrolyzes by carbapenemase, and non-CP-CRE, which includes mutations in porin, production of other β-lactamase, and overexpressed efflux pumps (Potter et al., 2016; Lutgring, 2019; Suay-Garcia and Perez-Gracia, 2019; Ma et al., 2023). Carbapenemases come from ambler classes A, B, or D. The most common carbapenemases are
In therapeutic science, traditional drugs, such as fosfomycin, aminoglycosides, colistin, tigecycline, and aztreonam, are still being used for CRE, but they have limits. Therefore, combination treatments, such as ceftazidime-avibactam, meropenem-varbobactam, ceftazidime-avibactam-aztreonam /ertapenem, and imipenem-relebactam, as well as novel treatments, such as plazomicin, cefiderocol, phage therapy, and zidebactam, are being developed (Potter et al., 2016; Suay-Garcia and Perez-Gracia, 2019; Tompkins and van Duin, 2021). The more potent treatments for CRE infections are meropenem-vaborbactam, imipenem-relebactam, plazomicin, cefiderocol, and aztreonam-avibactam (Tilahun et al., 2021). Moreover, new drugs are currently being developed, such as nacubactam and LYS228 (Tompkins and van Duin, 2021).
In this review, epidemiology, antibiotic resistance mechanisms, and treatment options for CRE were summarized to better understand and manage CRE infections.
CRE is largely divided into two groups: CP-CRE and non-CP-CRE (Lutgring, 2019). CP-CRE become resistant by producing carbapenemase that hydrolyzes carbapenem belonging to β-lactam. Non-CP-CRE acquire resistance through factors other than carbapenemase. Typically, it has cases that produce other β-lactamase, lose the function of porin, or overexpress the efflux pump (Suay-Garcia and Perez-Gracia, 2019).
Carbapenemases are enzymes that hydrolyze β-lactam antibiotics such as penicillins, cephalosporins, monobactams, and carbapenems. They are frequently carried by mobile genetic elements, such as plasmids and transposons (Queenan and Bush, 2007; Lutgring and Limbago, 2016). Carbapenemases are potentially dangerous because their resistant genes are likely to spread to naïve bacteria (Lutgring and Limbago, 2016). CP-CRE have a higher MIC, are more virulent, and have a higher mortality rate than non-CP-CRE (Tamma et al., 2017). CP-CRE, which has these characteristics, are the major resistance mechanisms (Suay-Garcia and Perez-Gracia, 2019). There is also the Ambler class of CP-CRE. The Ambler class is divided from Classes A to D. The active sites of Classes A, C, and D CP-CRE are serine, and the active site of Class B CP-CE is the zinc ion (Queenan and Bush, 2007). Classes A, C, and D are inhibited by clavulanic acid and tazobactam, and MBL, whose active site is Zn2+, is inhibited by EDTA and dipicolinic acid (DPA) (Ma et al., 2023). However, only A, B, and D are defined as carbapenemase because Class C cannot hydrolyze carbapenem (Queenan and Bush, 2007; Ma et al., 2023) (Fig. 1).
Class A carbapenemase was first detected in
The most common Class A carbapenemase in Enterobacterales is KPC (Potter et al., 2016). The KPC family is located on plasmids; therefore, they have powerful potential, such as acquired multidrug resistance to β-lactams for spread, and they are frequently found in
Class B carbapenemase was first detected in
The NDM family is the most common gene in this class in Enterobacterales. The most common species are
Class D is called oxacillinase (OXA), and it can hydrolyze penicillin and oxacillin (Queenan and Bush, 2007; Potter et al., 2016). OXA-encoding genes are mostly found in
The first case involves producing another β-lactamase including ESBL and AmpC cephalosporinase (Suay-Garcia and Perez-Gracia, 2019). ESBL and AmpC type β-lactamase rarely hydrolyze carbapenem, but they become resistant to antibiotics when these enzymes are overexpressed, leading to mutations in the porin located in the outer membrane protein (OMP) and increased efflux pump activity which can case reduced antibiotic inflow (Queenan et al., 2010; Goodman et al., 2016; Codjoe and Donkor, 2017).
The second case involves loss of porin function. Enterobacterales belong to Gram-negative bacteria. Gram-negative bacteria are surrounded by the outer membrane, and the OMP mainly serves as a permeable barrier. Porin is a water-filled channel that facilitates the absorption of hydrophilic compounds (Fernández and Hancock, 2012). Porin has different types for each bacteria. For example,
The third case is the overexpression of efflux pump. Bacteria operate pumps that can be ejected out of the cell to prevent the accumulation of harmful toxins or antibiotics in the cell. These are called efflux pumps (Fernández and Hancock, 2012) (Fig. 3). There are two main types of efflux pumps: ATP-binding cassette (ABC) transporter and secondary multidrug transporter (Fernández and Hancock, 2012). There are four types of secondary multidrug transporters, one of which is resistance-nodulation-division (RND), which in turn is one of Enterobacterales' multi-resistance mechanisms (Suay-Garcia and Perez-Gracia, 2019). The most common RND pump is AcrAB-TolC of
According to studies in various countries, carbapenemase genes are distributed by country (Fig. 4, Table 1). In Greece, the KPC gene was the most common and it is accounting for 75%, and the NDM gene was 25% in
Prevalence of carbapenemase in different countries
Country | Dominant enterobacteriaceae | Common carbapenemase gene | Reference |
---|---|---|---|
Greece | KPC (75%), NDM (25%) | Tsilipounidaki et al., 2022 Wang et al., 2018 Van Duin et al., 2020 Ma et al., 2023 Garg et al., 2019 Jamal et al., 2021 Garza-González et al., 2021 Tawfick et al., 2020 Perovic et al., 2020 |
|
China | KPC (76.5%) | ||
KPC (50%) | |||
NDM-5 (52.1%) | |||
NDM-1 (50.3%) | |||
NDM-1 (54.5%) | |||
NDM-1 (48.3%) | |||
U.S. | KPC-2 (51%), KPC-3 (41%) | ||
Brazil | KPC (94.7%), NDM (16%) | ||
Thailand | NDM (65%) | ||
India | NDM (63%) | ||
Republic of Korea | NDM (21.3%) | ||
Canada | NDM (37%), KPC (31%) | ||
Mexico | NDM (81.5%) | ||
Egypt | NDM-1 (68.88%), OXA-48 (32.59%) | ||
South Africa | OXA-48 (52%), NDM (34%), VIM (4%) | ||
Russia | NDM (71.92%) | ||
OXA-48-like (65.54%) | |||
Japan | IMP (100%) |
Finally, there were various distributions of carbapenemase genes in South Africa and Japan, OXA-48 (52%), NDM (34%), and VIM (4%) were common types, and the predominant species is
Carbapenem continues to be used as a treatment for Enterobacterales (Suay-Garcia and Perez-Gracia, 2019). However, it has been clinically noted that resistance to this drug is rising. Furthermore, depending on the type of CRE in question, it may be resistant to various antibiotics. These CREs can be treated with traditional antibiotics, a combination of antibiotics, novel drugs, and newly developed drugs (Karaiskos et al., 2019; Tompkins and van Duin, 2021). We indicated the characteristics of these options in Table 2.
CRE therapy options
Antibiotic option | Agent | Mechanism | Reference |
---|---|---|---|
Traditional | Fosfomycin | Inhibitor of cell wall production | Blais et al., 2018 Krause et al., 2016 Lin et al., 2017 Liu et al., 2020 Lomovskaya et al., 2017 Ma et al., 2023 Rahman and Koh, 2020 Potter et al., 2016 Shankar et al., 2017 Shields and Doi, 2019 Shirley, 2018 Silver, 2017 Suay-Garcia and Perez-Gracia, 2019 Tilahun et al., 2021 Wu et al., 2020 Zou et al., 2023 |
Aminoglycosides | Protein synthesis inhibitors | ||
Colistin (Polymixin) | Inhibit cell membrane production | ||
Tigecycline (Tetracycline) | Protein synthesis inhibitor | ||
Combination therapy | Ceftazidime+avibactam +aztreonam/ertapenem | Cell wall production inhibitor/B lactamase inhibitor | |
Meropenem+vaborbactam | Cell wall production inhibitor/B lactamase inhibitor | ||
Imipenem+relebactam | Cell wall production inhibitor/B lactamase inhibitor | ||
Novel drug | Plazomicin (Aminoglycoside) | Protein production inhibitor | |
Eravacycline (Tetracycline) | Protein production inhibitor | ||
Cefiderocol (Cephalosporin) | Cell wall synthesis inhibitor | ||
Novel therapy | Phage therapy | – | |
Currently in development | Zidebactam | B lactamase inhibitor | |
Taniborbactam | B lactamase inhibitor | ||
LYS228 (monobactam) | Cell wall production inhibitor | ||
Nacubactam | B lactamase inhibitor |
Traditional antibiotics show activity in several CREs. These antibiotics include fosfomycin, aminoglycosides, colistin, and tigecycline (Tompkins and van Duin, 2021). Fosfomycin is an antibiotic that is effective against gram-positive and gram-negative bacteria, especially a wide range of bacteria acting as antibiotics that inhibit cell wall synthesis against Enterobacterales (Silver, 2017). However, it is not suitable for upper urinary tract infections and is also sparingly used for the treatment of lower UTIs (Tilahun et al., 2021; Tompkins and van Duin, 2021). Aminoglycoside is a powerful and extensive antibiotic that acts through protein synthesis inhibition (Krause et al., 2016). It is still considered a primary treatment for carbapenem-resistant
Combination therapy is an approach to treating infections with two or more antibiotics. These therapeutic strategies are used to discourage the development of resistance to a single antibiotic and to more effectively suppress bacteria.
There are Ceftazidime+avibactam+aztreonam / ertapenem, meropenem+vaborbactam, and imipenem+relebactam which are β-lactam / β-lactamase inhibitor combinations (Suay-Garcia and Perez-Gracia, 2019; Tompkins and van Duin, 2021). Ceftazidime+avibactam is effective against β-lactamase from ambler Classes A, C, and D. However, this therapy is not effective against Class B MBLs (Shirley, 2018). With this approach, the use of ceftazidime+avibactam with aztreonam, which has activity against mannose-binding lectins (MBLs), has been shown to improve activity against MBLs (Ma et al., 2023). This therapy is considered a very promising treatment option for the NDM-producing-Enterobacterales. The important point at this time is that aztreonam can be degraded by other β-lactamases that accompany MBLs (Shields and Doi, 2019). Additionally, the use of ceftazidime+avibactam with ertapenem has been used to successfully treat multi-drug resistant
Meropenem+varbobactam is largely effective against Class A carbapenemase, especially KPC. However, it is not effective against Class B and Class D carbapenemase (Lomovskaya et al., 2017). Therefore, it can have limited utility in areas where MBLs and OXA-48-like enzymes mainly appear.
Imipenem+relebactam is the most recent drug combination, and it is effective against Class A carbapenemase. On the other hand, it is not effective against MBLs and shows little or no activity against OXA-48-like carbapenemase (Tompkins and van Duin, 2021).
Plazomicin is a novel semi-synthetic aminoglycoside that inhibits protein synthesis. Plazomicin has extensive activity against Enterobacterales and is effective against ESBL enzymes and various CRE enzymes, including KPC, VIM, IMP, and OXA-48. However, its effect against MBLs, such as NDM-1, may be limited (Tompkins and van Duin, 2021).
Eravacycline is a novel, fully synthetic fluorocycline that inhibits protein synthesis in bacteria. It has extensive antimicrobial activity against gram-positive, gram-negative, and anaerobic bacteria. It is also effective against bacteria resistant to other antibiotic families. However, it is inactive against
Cefiderocol is a novel cephalosporin that facilitates cell membrane synthesis and stops overexpression-related resistance of pump and porin channel mutations (Rahman and Koh, 2020). Cefiderocol is active against CRE enzymes, such as KPC, NDM, VIM, IMP, and OXA-48 enzymes, in
Phage therapy, which is a treatment method that utilizes a naturally occurring virus called bacteriophage to infect and destroy bacteria, is being re-examined. These bacteriophages attach to the surface receptors of the target bacteria and transfer viral genetic information into the bacterial cells. Bacteria use this genetic information to generate copies of viruses and package new viral particles to destroy them through cell rupture. This kills infected bacterial cells and causes new viral particles to infect the target bacteria in a self-replicating process which may require repeated administration in clinical practice (Lin et al., 2017; Tompkins and van Duin, 2021).
Various drugs are currently being developed, including zidebactam, nacubactam, LYS228, and taniborbactam (Tompkins and van Duin, 2021). Zidebactam and nacubactam have a high affinity to beta-lactamase, which corresponds to Ambler Classes A and C (Suay-Garcia and Perez-Gracia, 2019). Zidebactam, in particular, is active against KPC, OXA-48, and several Class B carbapenemases when combined with cefepime (Tompkins and van Duin, 2021). Nacubactam exhibits strong
The number of patients with suppressed or decreased immunity is increasing rapidly due to existing surgical practices, drug treatments, and immunosuppressive treatments. CRE infections are rapidly spreading in medical institutions, where many of these patients are being cared for. Furthermore, as resistance to various antibiotics increases, these bacteria cause various diseases, such as sepsis through bloodstream infections and urinary tract infections, making them difficult to treat. The most common of these CRE species are
CRE becomes resistant by forming enzymes, mutation porin or efflux pumps, or producing another β-lactamase. The most common resistance mechanism is the production of carbapenemase enzymes. These enzymes vary by country. In China, Greece, the U.S., and Brazil, KPC is the main enzyme. NDM is the main enzyme in the Republic of Korea, Egypt, Canada, Mexico, Thailand, and India. Oxa-48 is the main enzyme in South Africa, and Russia. IMP is the main enzyme in Japan.
The latest antibiotics approved and already being used to treat CRE infections are ceftazidime+avibactam, meropenem +varbobactam, plazomicin and eravacycline. CRE is a gram-negative bacteria, unlike gram-positive bacteria, that has an outer membrane, so it can interact with various bacteria. Therefore, CRE is more dangerous because antibiotic-resistant genes are likelier to be transferred to other types of bacteria.
These infections are also expanding into communities.
In conclusion, this review paper was introduced various antibiotic resistance mechanisms and treatment options for CRE and present the importance of infection control for CRE. Therefore, new attempts are needed to further identify the antibiotic resistance in CRE, development of diagnostic tests to quickly detect it, and efforts to provide efficient preventative treatment and infection control within hospital or the community.
This paper was supported by a research fund from the Catholic University of Pusan and by the BB21plus fund by Busan Metropolitan City and Busan Techno Park.
The authors declare that they have no conflicts of interest.